Publications & Presentations

IIene K. Sugino, Qian Sun, Jianqiu Wang, Celia F. Nunes, Noounanong Cheewatrokoolpong, Aprille Rapista, Adam C. Johnson, Christopher Malcuit, Irina Klimanskaya, Robert Lanza and Marco A. Zarbin  "Comparison of fetal RPE and human embryonic stem cell derived-RPE (hES-RPE) behavior on aged human Bruch's membrane" IOVS iovs.10-5386; published ahead of print April 1, 2011

Malcuit, C. And Fissore, R. (2010) “Recent Advances in the Understanding of the Molecular Effectors of Mammalian Egg Activation” Oocyte Maturation and Fertilization: A Long History for a Short Event, 121-134

Page, R., Holmes, W.F., Kole, D., Huntress, V., Vilner, L., Ambady, S., Kashpur, O., Vojtic, I., Whitton, H. and T. Dominko (2009). Induction of stem cell gene expression in adult human dermal fibroblasts without transgenes. Cloning and Stem Cells, 11:417-426.

Ambady, S., Holmes, W. F., Kole, D., Kashpur, O., Page, R. L.  and T. Dominko (2009). Differential Expression of NANOG and Its Pseudogene NANOGP8 in Differentiated Cells.
American Society for Cell Biology Annual Meeting, San Diego, CA, December 4-9th.

Kole, D., Ambady, S., Page, R. L., Holmes, W. and T. Dominko (2009). Reprogramming of Adult Human Fibroblasts by Xenopus Egg Extract Fractions.  American Society for Cell Biology Annual Meeting, San Diego, CA, December 4-9th.

Makridakis J.L., Pins G.D., Dominko, T. and R.L. Page (2009). Design of a Novel Engineered Muscle Construct Using Muscle Derived Fibroblastic Cells Seeded onto Braided Collagen Threads, 35th Northeast Bioengineering Conference. Brown University, Providence, RI.

Makridakis J.L., Pins G.D., Dominko, T. and R.L. Page (2009). Design of a Novel Engineered Muscle Construct Using Muscle Derived Fibroblastic Cells Seeded onto Braided Collagen Threads, Pittsburgh Tissue Engineering, PA.

Dominko, T. (2010). Cellular reprogramming: Current technology/perspectives and generation of induced pluripotent cells. In: Human Stem Cell Technology and Biology: A Research Guide and Laboratory Manual. Wiley-Blackwell Publishers, (Borowski et al., Editors).  In Press.

Billiar, K.L., Throm, A.M., Frey, M.T., "Biaxial failure properties of planar living tissue equivalents," Journal of Biomedical Materials Research, Part A. - accepted for publication.

Pai, S., Gunja, N., Dupak, E., McMahon, N., Roth, T., Lalikos, J., Dunn, R., Francalancia, N., Pins, P., Billiar, K.L., "An in vitro comparison of wire and plate fixation for midline sternotomies," Accepted for publication- Annals of Thoracic Surgery.

Crusberg, T.C., Gudmundsson, G., Chiulli, A., and Biederman, R. Biomineralization of an insoluble precipitate within the matrix of mycelia beads of Penicillium ochro-chloron. J. Industrial Microbiol. In Press.

McGimpsey, W. G.; Guler, M.; Cooper, C. G. F. "Singlet-Singlet and Triplet-triplet Energy Transfer in Bichromophoric Peptides. Submitted.

McGimpsey, W. G.; Cooper, C. G. F. "Self-Assembled Peptide Nanotubes as Scaffolds for Molecular Electronic Wires." Submitted.

W. R. Michalson, J. Single, M. Spadazzi, and M. Wehr, "A Real-Time GPS System for Monitoring Forestry Operations," in review, Sixth Biennial Forest Service Remote Sensing Applications Conference.

“Adsorption of Disinfection Byproducts on Hydrophobic Zeolites with Regeneration by Advanced Oxidation,” Microporous and Mesoporous Materials, N. Koryabkina, J. Bergendahl, R. Thompson, and A. Giaya, 104, 77-82, 2007.

Cohen IS, Rosen AB, and Gaudette GR. A Caveat Emptor for myocardial regeneration: Mechanical without electrical recovery will not suffice. Journal of Molecular and Cellular Cardiology (Invited Editorial) 2007; 42(2):285-8.

Kelly DJ, Azeloglu EU, Kochupura PV, Sharma GS, Gaudette GR. Accuracy and reproducibility of a subpixel extended phase correlation method to determine micron level displacement in the heart. Medical Engineering and Physics 2007; 29:154-62.

A. Lewis, N. Kazantzis, I. Fishtik and J. Wilcox, 2007, "Integrating Process Safety and Molecular Modeling - Based Risk Assessment of Chemicals Within the REACH Regulatory Framework: Benefits and Future Challenges ", Journal of Hazardous Materials, vol. 142, pp. 592-602.

R. R. Kotdawala, A. O. Yazaydin, N. Kazantzis and R. W. Thompson, 2007, " A Molecular Simulation Approach to the Study of Adsorption of Hydrogen Cyanide and Methyl Ethyl Ketone in Silicalite, Mordenite, and Zeolite Beta Structures", Molecular Simulation, vol. 33, pp. 843-850

C. Kravaris, V. Sotiropoulos, C. Georgiou, N. Kazantzis, M. Xiao, and A. J. Krener, 2007, " Nonlinear Observer Design for State and Disturbance Estimation", Systems and Control Letters, vol. 56, pp. 730-735.

R. R. Kotdawala, N. Kazantzis and R. W. Thompson, 2007, "Molecular Simulation Studies on the Adsorption of Mercuric Chloride" , Environmental Chemistry, vol. 4, pp. 55-64.

N. Kazantzis, 2007, "Discussion on Attenuation of Oscillations in Galerkin Systems Using Center-Manifold Techniques", European Journal of Control, vol. 13, pp. 543-551.

Stevens K*, Rolle MW*, Minami E, Ueno S, Nourse M, Virag J, Reinecke H, Murry CE. (2007) Chemical dimerization of fibroblast growth factor receptor-1 induces myoblast proliferation, increases intracardiac graft size, and reduces ventricular dilation in infarcted hearts. Hum Gene Ther 18(5): 401-412.. (*Authors contributed equally.)

Sayan Mondal, Chun Yang, Joseph D. Petruccelli, Chun Yuan, Fei Liu, Tom Hatsukami, Dalin Tang, A New Hypothesis for Human Atherosclerotic Plaque Progression Based on Serial In Vivo MRI and Computational Modeling Method, Proceedings of the ASME 2007 Summer Bioengineering Conference, June 20-24, Keystone Resort & Conference Center, Keystone, Colorado, USA (SBC2007), Undergraduate Student paper competition: honorable mentioning, 2007.

Dalin Tang, Chun Yang, Joseph D. Petruccelli, Fei Liu, Tom Hatsukami, Sayan Mondal, Chun Yuan, Plaque Wall Stress Correlates Negatively with Atherosclerosis Progression: Possible New Hypotheses for Plaque Progression, American Heart Association Journal: Arteriosclerosis, Thrombosis and Vascular Biology, Vol 27: e35-e137. P359, June 2007.

Chun Yang, Dalin Tang,* Idith Haber, Tal Geva, Pedro J. del Nido, In Vivo MRI-Based 3D FSI RV/LV Models for Human Right Ventricle and Patch Design for Potential Computer-Aided Surgery Optimization, Computers & Structures, 85, 988-997, 2007.

Dalin Tang, Chun Yang, Tal Geva,  Pedro J. del Nido, Patient-Specific MRI-Based 3D FSI RV/LV/Patch Models for Pulmonary Valve Replacement Surgery and Patch Optimization, accepted to Journal of Biomechanical Engineering, 2007, in press.

Xueying Huang, Chun Yang, Chun Yuan,  Fei Liu,  Gador Canton,   Jie Zheng,  Pamela K. Woodard,  Gregorio A. Sicard, Dalin Tang.  Patient-Specific Artery Shrinkage and 3D Zero-Stress State in Multi-Component 3D FSI Models for Carotid Atherosclerotic Plaques Based on In Vivo MRI Data, accepted to: Journal of Molecular & Cellular Biomechanics, 2007, in press.

Kotdawala, R. R., Yazaydin, A. O., Kazantzis, N., and Thompson, R. W., “A Molecular Simulation Approach to the Study of Adsorption of Hydrogen Cyanide and Methyl EthylKetone in Silicalite, Mordenite, and Zeolite Beta Structures,” Molecular Simulation (2007) 33, 843-850.

Kotdawala, R. R., Kazantzis, N., and Thompson, R. W., “Molecular Simulation Studies on the Adsorption of Mercuric Chloride,” Environmental Chemistry (2007) 4, 55-64.

Al-Ananzeh, N. M., John A. Bergendahl, J. A., and Robert W. Thompson, R. W., “A Kinetic Model for the Aqueous Degradation of MTBE by Fe0/ H2O2,” Prog. React. Kin. Mech. (2007) 32, 131-151.

Koryabkina, N., Bergendahl, J., Thompson, R. W., and Giaya, A., “Adsorption of Disinfection Byproducts on Hydrophobic Zeolites with Regeneration by Advanced Oxidation,” Microporous & Mesoporous Materials (2007) 104, 77-82.

Edward A. Clancy, Oljeda Bida and Denis Rancourt, "Influence of advanced electromyogram (EMG) amplitude processors on EMG-to-torque estimation during constant-posture, force-varying contractions," Journal of Biomechanics, Vol. 39, pp. 2690-2698, 2006.

Mark, S., Crusberg, T., Dacunha, C., and A. DiIorio. A heavy metal biotrap for wastewater remediation, Biotech Prog., 2006, 22, 523-531.

Badylak SF, Kochupura PV, Cohen IS, Doronin SV, Saltman AE, Gilbert TW, Kelly DJ, Ignotz RA, Gaudette GR. The use of extracellular matrix as an inductive scaffold for the partial replacement of functional myocardium. Cell Transplantation 2006; 15:S29-40.

Azeloglu EU, Yun YH, Saltman AE, Krukenkamp IB, Chiang FP, Chen W, Gaudette GR. High resolution mechanical function in the intact porcine heart: mechanical effects of pacemaker location. Journal of Biomechanics 2006; 39: 717-725.

Gaudette GR, Cohen IS. Cardiac Regeneration: Materials can improve the passive properties of myocardium but cell therapy must do more. (Invited Editorial) Circulation 2006; 114:2575-2577.

M. Rowan and P.C. Pedersen, “An Injury Mimicking Ultrasound Phantom as a Training Tool for Diagnosis of Internal Trauma,” 2006 IEEE Ultrasonics Symposium Proceedings, Vancouver, Canada, Oct., 2006, pp. 1613 - 1617

R.J. Duckworth, P. Cordeiro and P.C. Pedersen, “Clinical evaluation of wearable ultrasound imaging system,” 2006 American Telemedicine Assoc., San Diego, CA, May, 2006.

P.C. Pedersen, P. Cordeiro, R.J. Duckworth and T.L. Szabo, “Development and testing of wireless wearable ultrasound scanner,” 2006 AIUM Annual Convention, Washington DC, March 23 – 26, 2006.

P.C. Pedersen, V. Mitra and J. Dey, “Boundary detection in 3D ultrasound reconstruction using nearest neighbor map,” Medical Imaging 2006: Ultrasonic Imaging and Signal Processing. Edited by Emelianov, Stanislav; Walker, William F. Proceedings of the SPIE, Volume 6147, San Diego, CA, Febr. 11 - 16, 2006, pp. 57-67, 2006

J. Dey, D.A. Tighe, G. Vijayaraghavan, V. Mitra and P.C. Pedersen, “Prior-shape based segmentation of various objects in ultrasound images after speckle-reduction using level-set-based curvature reduction,” Medical Imaging 2006: Image Processing. Edited by Reinhardt, Joseph M.; Pluim, Josien P. W. Proceedings of the SPIE, Volume 6144, San Diego, CA, Febr. 11 - 16, 2006, pp. 1515-1523, 2006.

Pins, GD, Bush, KA, Cunningham, L.P., and Campagnola, P.J., "Multiphoton Excited Fabricated Nano and Micro Patterned Extracellular Matrix Proteins Direct Cellular Morphology". Journal of Biomedical Materials Research, 78A(1):194-204 (2006).

Bush, KA, Downing, BR,,Walsh, SE, and Pins, GD., "Conjugation of Extracellular Matrix Proteins to Basal Lamina Analogs Enhances Keratinocyte Attachment", Journal of Biomedical Materials Research, Accepted (2006).

Cornwell, KG and Pins, GD, "Crosslinking of discrete self-assembled collagen threads: Effects on mechanical strength and cell-matrix interactions" Journal of Biomedical Materials Research, Accepted (2006)

Cornwell, K.G., and Pins, GD., "Characterization of Discrete Crosslinked Fibrin Microthread Scaffolds for Tissue Regeneration", Journal of Biomedical Materials Research Accepted (2006).

Labbe, N., Wilcox, J., and Thompson, R. W., “Ab Initio Studies of Cyclohexane Adsorption on Zeolites,” 9th Int. Conf. on Engineering Education (July 23-28, 2006) T1A-1 – T1A-6.

“Batch Leaching Tests: Colloid Release and PAH Leachability,” Soil and Sediment Contamination: An International Journal, 14 (6), 527-543, 2005.

“Toward a Broader Technical Education for Engineers,” Journal of Professional Issues in Engineering Education and Practice, ASCE, 131 (4), 257-262, 2005.

Edward A. Clancy, Dario Farina and Roberto Merletti, "Cross-Comparison of Time- and Frequency-Domain Methods for Monitoring the Myoelectric Signal During a Cyclic, Force-Varying, Fatiguing Hand-Grip Task," Journal of Electromyography and Kinesiology, Vol. 15, pp. 256-265, 2005.

Ibanez, E., Sanfins, A, Combelles, C.M.H., Overstrom, E.W. and D.F. Albertini. (2005) Genetic strain variations in the metaphase-II phenotype of mouse oocytes matured in vivo or in vitro. Reproduction 130:845-855.

Fischer Russell, D., Ibanez, E., Albertini, D.F., and E.W. Overstrom. (2005) Activated bovine cytoplasts prepared by demecolcine-induced enucleation support development of nuclear transfer embryos in vitro. Mol.Reprod.Devel. 72:161-170. DOI 10.1002/mrd.20356

Ibanez, E., Albertini, D.F. and E.W. Overstrom. (2005) Effect of genetic background and activation stimulus on the timing of meiotic cell cycle progression of parthenogenetically activated mouse oocytes. Reproduction 129:27-38. DOI: 10.1530/rep.1.00452

Pai, S., Gunja, N., Dupak, E., McMahon, N., Lalikos, J., Dunn, R., Francalancia, N., Pins GD and Billiar, K., "The Effect of Rigidity in Fixation Devices on Sternal Separation", Annals of Thoracic Surgery, 80: 962-8 (2005).

“Adsorption of Methyl Tertiary Butyl Ether on Hydrophobic Molecular Sieves,” Environmental Engineering Science, with A. Erdem-Şenatalar, A. Giaya and R.W. Thompson, 21 (6), 722-729, 2004.

"Fenton's Oxidation of MTBE with Zero-Valent Iron," Water Research, with T. Thies, 38 (2), 327-334, 2004.

Edward A. Clancy, Kevin D. Cairns, Patrick O. Riley, Melvin Meister and D. Casey Kerrigan, "Effects of Treadmill Walking Speed on Lateral Gastrocnemius Muscle Firing," American Journal of Physical Medicine & Rehabilitation, Vol. 83, No. 7, pp. 507–514, 2004.

"Performance Evaluation of the RF Receiver for Precision Positioning System" by Parikh, Michalson, Duckworth, ION GNSS 2004, California, September 2004.

"Field Deployable Ultrasound Imaging System" by Pedersen, Duckworth, Sebastian, Poulsen, ATA 2004, Ninth annual meeting and exposition, Florida, May 2004.

C. Liu and J. McNeill, "Jitter in Oscillators With 1/f Noise Sources," IEEE 2004 International Symposium on Circuits and Systems (ISCAS2004), Vancouver, Canada, May 2004.

J. McNeill, "A Model For University-Industry Collaboration: The Center for Analog and Mixed Signal Integrated Circuit Design at WPI," (Invited Paper), 5th European Workshop on Microelectronics Education (EWME2004), Lausanne, Switzerland, April 2004.

Sanfins, A, Plancha, C.E., Overstrom, E.W. and D.F. Albertini. (2004) Meiotic spindle morphogenesis in in vivo and in vitro matured mouse oocytes: Insights into the relationship between nuclear and cytoplasmic quality. Human Reprod. 19:2889-2899.

"Mechanistic Basis for Particle Detachment from Granular Media," Environmental Science and Technology, with D. Grasso, 37 (10), 2317-2322, 2003.

"Pilot-Scale Fenton's Oxidation of Organic Contaminants in Groundwater using Autochthonous Iron," Journal of Hazardous Materials, with S. Hubbard and D. Grasso, 99 (1), 43-56, April 4, 2003.  

Crusberg, T., C., Mark, S. and A. A. DiIorio, 2003. Biomineralization of Heavy Metals In Handbook of Fungal Biotechnology 2ed, Chapter 67, Marcel-Dekker, New York.

McGimpsey, W. G.; Nienaber, H. A.; Benco, J. S. " Highly Selective Ammonium Ion Sensors for Ion-Selective Electrode and Optical Sensor Applications." Anal. Chem. 2003.

Medhekar, V.; Thompson, R. W.; Wang, A.; McGimpsey, W. G. "Modeling the Oxidative degradation of Ultra-High Molecular Weight Polyethylene." J. Appl. Polym. Sci. 2003, 87, 814.

Soto, E.; MacDonald, J. C.; Cooper, C. G. F.; McGimpsey, W. G. "A Non-Covalent Strategy for the Assembly of Supramolecular Photocurrent-Generating Systems." J. Am. Chem. Soc. (Comm. Ed.) 2003

Y. Toh and J. McNeill, "Single-ended to differential converter for multiple-stage single- ended ring oscillators ," IEEE Journal of Solid-State Circuits, vol. 3, no. 1, pp. 141-145, January 2003.

"Optical Sensors", In: Clinical Engineering, Eds. David, von Maltzahn, Neuman and Bronzino, CRC Press, 2003.

"Optical Sensors", In: Encyclopedia of Medical Devices and Instrumentation, 2nd edition, J. Webster, Ed. John Wiley and Sons, 2003.

Ibanez, E., Albertini, D.F. and E.W. Overstrom. (2003) Demecolcine-induced oocyte enucleation for somatic cell cloning: Coordination between cell cycle egress, kinetics of cortical cytoskeletal interactions, and second polar body extrusion. Biol. Reprod. 68:1249-1258,

"A Review of Non-DLVO Interactions in Environmental Colloidal Systems," Reviews in Environmental Science and Biotechnology, with D. Grasso, K. Strevett, M. Butkus, and K. Subramanian, 1 (1), 17-38, 2002.

Edward A. Clancy, Evelyn L. Morin and Roberto Merletti, "Sampling, Noise-Reduction and Amplitude Estimation Issues in Surface Electromyography," Journal of Electromyography and Kinesiology, Vol. 12, No. 1, pp. 1-16, 2002.

Mendelson, Y., Lewinsky, RM and Wasserman, Y., "Multi-Wavelength Reflectance Pulse Oximetry", Anesth. Analg., 94, pp. S26-S30, 2002.

Murry CE, Whitney ML, Reinecke H. (2002) Muscle grafting for the prevention and treatment of heart failure. J Card Fail 8(6 Suppl): S532-541.

Billiar, K.L., Murray, J., Laude, D., Abraham, G., Bachrach, N., Effects of carbodiimide crosslinking conditions on the physical properties of laminated intestinal submucosa, J Biomed Mater Res., Vol. 56, No. 1, pp. 101-8, 2001.

Whitney ML, Otto KG, Blau CA, Reinecke H, Murry CE. (2001) Control of myoblast proliferation with a synthetic ligand. J Biol Chem 276(44): 41191-41196.

"Prediction of Colloid Detachment in a Model Porous Media: Hydrodynamics," Chemical Engineering Science, with D. Grasso, 55, 1523-1532, 2000.  

Abraham,G.A., Murray, J., Billiar, K.L., Sullivan, S.J., Evaluation of the porcine collagen layer as a biomaterial, J Biomed Mater Res., Vol. 51, pp. 442-452, 2000.

Billiar, K.L. and Sacks, M.S. Biaxial mechanical properties of the fresh and glutaraldehyde treated porcine aortic valve: Part I - Experimental results, J Biomech Engr, Vol. 122, No. 1, pp. 23-30, 2000.

Edward A. Clancy and Kristin A. Farry, "Adaptive Whitening of the Electromyogram to Improve Amplitude Estimation," IEEE Transactions on Biomedical Engineering, Vol. 47, No. 6, pp. 709-719, 2000.

"Prediction of Colloid Detachment in a Model Porous Media: Thermodynamics," American Institute of Chemical Engineers Journal, with D. Grasso, 45, 475-484, 1999.  

DiIorio, A.A., High Viscosity and Mixing Issues Encountered During The Production of a High Molecular Weight Biopolymer, SIM Regional Meeting, 1999, Worcester, MA.

"Colloid Generation During Batch Leaching Tests: Mechanics of Disaggregation," Colloids and Surfaces A: Physicochemical and Engineering Aspects, with D. Grasso, 135, 193-206, 1998.

Discussion Article: "Role of Short-Range Forces in Particle Detachment During Filter Backwashing," Journal of Environmental Engineering, with M. Butkus & D. Grasso, 123, 726-728, 1997.

Detection of Divalent Transition Metal Ions in Complex Media BY Capillary Electrophoresis, J.D. Sgammato, A. DiIorio, and T.C. Crusberg, in 1997 Proceedings, Conference on Hazardous Waste Research, Kansas State University, Editors Larry E. Erickson, Mary M. Rankin, Stanley C. Grant, and J. Patrick McDonald
Biomineralization of Copper: Solutions for Waste Remediation and Biomining C.R. Ashby, S.A. Thompson,and T.C. Crusberg, in 1997 Proceedings, Conference on Hazardous Waste Research, Kansas State University, Editors Larry E. Erickson, Mary M. Rankin, Stanley C. Grant, and J. Patrick McDonald

DiTullio, D., DiIorio, A., and Yong Wang. 1997. Enhancement of Cyclomarin A production by a marine actinomycete in sea water free medium. SIM BMP Meeting, Williamsburg, VA.

R.J. Duckworth, "Workview Office Student Edition - schematic entry and digital analysis", Prentice Hall, 1997.

J. McNeill, "Jitter in ring oscillators," IEEE Journal of Solid-State Circuits, vol. 32, no. 6, pp. 870-879, June 1997.

Jong Y, Jacob J, Yip K-P, Gardner G, Seitelman E, Whitney M, Mathiowitz E. (1997) Controlled release of plasmid DNA. J Controlled Release 47(2): 123-134.

Crusberg, T.C., "Expectations for Commercial Adoption of New Heavy Metal Bioremediation Technologies", in Proceedings of International Society for Environmental Biotechnology Meeting, Boston, 1996.

W. R. Michalson and R. L. Labonte, "Capstone Design in the ECE Curriculum: Assessing the Quality of Undergraduate Projects at WPI," to appear, American Society of Engineering Educators 1996 Annual Conference, Washington, D.C., June, 1996.

"Case Study: A Cardboard Box Manufacturer," Pollution Prevention Review, 5, 15-19, 1995.

W. R. Michalson, "Ensuring GPS Navigation Integrity using Receiver Autonomous Integrity Monitoring," IEEE Aerospace and Electronic Systems Magazine. vol. 10, no. 10, pp. 31-34, October 1995.

J. Bernick and W. R. Michalson, "UDSRAIM: An Innovative Approach to Increasing RAIM Availability," to appear, ION GPS-95, 8th International Meeting of the Satellite Division of the Institute of Navigation, Sep 12-15, 1995.

C. Easton and W. R. Michalson, "Effects of Worst Case Geometries on RAIM Testing," to appear, ION GPS-95, 8th International Meeting of the Satellite Division of the Institute of Navigation, Sep 12-15, 1995.

Duckworth, "Rapid Prototyping in the curriculum", editorial, Engineering Science and Education Journal, Volume 3, Number 5, October 1994.

Clayton, Duckworth, Michalson, and Wilson, "Determining update latency bounds in Galactica Net", Concurrency: Practice and Experience", Volume 6 Number 7, October 1994, pp. 595-611.

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Last modified: April 15, 2011 10:46:00